Nan-kuei Chen

Nan-kuei Chen

Associate Professor, Biomedical Engineering
Associate Professor, BIO5 Institute
Primary Department
Department Affiliations
Contact
(520) 626-0060

Research Interest

I am an MR physicist with extensive expertise in fast image acquisition methodology, pulse sequence design, and artifact correction for neuro MRI. In the past 18 years, I have developed novel approaches effectively addressing various types of challenging MRI artifacts, ranging from echo-planar imaging (EPI) geometric distortions, to susceptibility effect induced signal loss, to EPI Nyquist artifact, to motion-induced phase errors and aliasing artifacts in interleaved EPI based diffusion-weighted imaging. I am the original developer of multiplexed sensitivity encoded (MUSE) MRI, which can measure human brain connectivity in vivo at high spatial-resolution and accuracy, as shown in the publications listed below. More generally, my research involves the application of MR protocols in translational contexts. I have served as PI on NIH-funded R01, R21 and R03 grants, and have had extensive experience as a co-investigator on NIH-funded projects. The current focus of my research includes: * Development of high-throughput and motion-immune clinical MRI for imaging challenging patient populations * Imaging of neuronal connectivity networks for studies of neurological diseases * High-fidelity and multi-contrast MRI guided intervention * Characterization and correction of MRI artifacts * Signal processing and algorithm development * MRI studies of human development

Publications

Chen, N. k., & Wyrwicz, A. M. (1999). Removal of intravoxel dephasing artifact in gradient-echo images using a field-map based RF refocusing technique. Magnetic resonance in medicine, 42(4), 807-12.

A technique is proposed to compensate for the slice dephasing artifact and improve the signal-to-noise ratio (SNR) of gradient-echo images. This method is composed of two components: mapping of the internal gradient and design of the slice-selective radiofrequency (RF) pulse. The RF pulse is designed with its phase response as the negative of the product of a chosen echo time and the intravoxel internal gradient profile in a specified region of interest (ROI). The designed RF pulse can refocus the spin phases at a selected echo time and therefore effectively recover the signal loss due to both linear and nonlinear internal gradients. Principles, implementation, and application of the method are described in this note. Magn Reson Med 42:807-812, 1999.

Madden, D. J., Parks, E. L., Davis, S. W., Diaz, M. T., Potter, G. G., Chou, Y., Chen, N., & Cabeza, R. (2014). Age mediation of frontoparietal activation during visual feature search. NeuroImage, 102 Pt 2, 262-74.

Activation of frontal and parietal brain regions is associated with attentional control during visual search. We used fMRI to characterize age-related differences in frontoparietal activation in a highly efficient feature search task, detection of a shape singleton. On half of the trials, a salient distractor (a color singleton) was present in the display. The hypothesis was that frontoparietal activation mediated the relation between age and attentional capture by the salient distractor. Participants were healthy, community-dwelling individuals, 21 younger adults (19-29 years of age) and 21 older adults (60-87 years of age). Top-down attention, in the form of target predictability, was associated with an improvement in search performance that was comparable for younger and older adults. The increase in search reaction time (RT) associated with the salient distractor (attentional capture), standardized to correct for generalized age-related slowing, was greater for older adults than for younger adults. On trials with a color singleton distractor, search RT increased as a function of increasing activation in frontal regions, for both age groups combined, suggesting increased task difficulty. Mediational analyses disconfirmed the hypothesized model, in which frontal activation mediated the age-related increase in attentional capture, but supported an alternative model in which age was a mediator of the relation between frontal activation and capture.

Chang, H., Sundman, M., Petit, L., Guhaniyogi, S., Chu, M., Petty, C., Song, A. W., & Chen, N. (2015). Human brain diffusion tensor imaging at submillimeter isotropic resolution on a 3Tesla clinical MRI scanner. NeuroImage, 118, 667-75.

The advantages of high-resolution diffusion tensor imaging (DTI) have been demonstrated in a recent post-mortem human brain study (Miller et al., NeuroImage 2011;57(1):167-181), showing that white matter fiber tracts can be much more accurately detected in data at a submillimeter isotropic resolution. To our knowledge, in vivo human brain DTI at a submillimeter isotropic resolution has not been routinely achieved yet because of the difficulty in simultaneously achieving high resolution and high signal-to-noise ratio (SNR) in DTI scans. Here we report a 3D multi-slab interleaved EPI acquisition integrated with multiplexed sensitivity encoded (MUSE) reconstruction, to achieve high-quality, high-SNR and submillimeter isotropic resolution (0.85×0.85×0.85mm(3)) in vivo human brain DTI on a 3Tesla clinical MRI scanner. In agreement with the previously reported post-mortem human brain DTI study, our in vivo data show that the structural connectivity networks of human brains can be mapped more accurately and completely with high-resolution DTI as compared with conventional DTI (e.g., 2×2×2mm(3)).

Mulkern, R. V., Chen, N., Oshio, K., Panych, L. P., Rybicki, F. J., & Gambarota, G. (2004). Fast spectroscopic imaging strategies for potential applications in fMRI. Magnetic resonance imaging, 22(10), 1395-405.

Technical aspects of two general fast spectroscopic imaging (SI) strategies, one based on gradient echo trains and the other on spin echo trains, are reviewed within the context of potential applications in the field of functional magnetic resonance imaging (fMRI). Fast spectroscopic imaging of water may prove useful for identifying mechanisms underlying the blood oxygenation level dependence (BOLD) of the water signal during brain activation studies. Reasonably rapid mapping of changes in proton signals from brain metabolites, like lactate, creatine or even neurotransmitter associated metabolites like GABA, is substantially more challenging but technically feasible particularly as higher field strengths become available. Fast spectroscopic methods directed towards the 31P signals from phosphocreatine (PCr) and adenosine tri-phosphates (ATP) are also technically feasible and may prove useful for studying cerebral energetics within fMRI contexts.

Chu, M. L., Chang, H. C., Chung, H. W., Bashir, M. R., Cai, J., Zhang, L., Sun, D., & Chen, N. K. (2018). Free-breathing abdominal MRI improved by repeated k-t-subsampling and artifact-minimization (ReKAM). Medical physics, 45(1), 178-190.

PURPOSE:We report an approach, termed Repeated k-t-subsampling and artifact-minimization (ReKAM), for removing motion artifacts in free-breathing abdominal MRI. The method is particularly valuable for challenging patients who may not hold their breath for a long time or have irregular respiratory rate.METHODS:The ReKAM framework comprises one acquisition module and two reconstruction modules. A fast MRI sequence is used to repeatedly acquire multiple sets of k-t space data. Motion artifacts are then minimized by two reconstruction modules: (a) a bootstrapping module in k-t-space is used to identify a low-artifact image; (b) a constrained reconstruction module that integrates projection onto convex set (POCS) and multiplexed sensitivity encoding (MUSE), termed POCSMUSE, is applied to further remove residual artifact. The ReKAM framework is compatible with different pulse sequences, and generally applicable to irregular data sampling patterns in k-space. Free-breathing fast spin-echo MRI data, acquired from healthy volunteers and patients, were used to evaluate the developed ReKAM method.RESULTS:Experimental results show that the ReKAM technique can produce high-quality free-breathing images with the artifact levels comparable to that of breath-holding MRI.CONCLUSION:The ReKAM framework improves the quality of free-breathing abdominal MRI data, and is compatible with various MRI pulse sequences.