Lingling An

Lingling An

Associate Professor, Agricultural-Biosystems Engineering
Associate Professor, Public Health
Associate Professor, Statistics-GIDP
Associate Professor, BIO5 Institute
Member of the General Faculty
Member of the Graduate Faculty
Primary Department
Department Affiliations
Contact
(520) 621-1248

Research Interest

Lingling An, PhD, conducts research in the interdisciplinary boundaries of many fields such as statistical sciences, biological and medical sciences, genomics and genetics. Her statistical group's major research interests include development and application of statistical and computational methods for analysis of high-dimensional genomic/genetic, metagenomic/ metatranscriptomic, and epigenomic data. The overlying vision is to develop rigorous, timely and useful statistical and computational methodologies to help biologists/geneticists to ask, answer, and disseminate biologically interesting information in the quest to understand the ultimate function of DNA and gene network.

Publications

Long, A. A., Mahapatra, C. T., A., E., Rohrbough, J., Leung, H., Shino, S., Lingling, A. n., Doerge, R. W., Metzstein, M. M., Pak, W. L., & Broadie, K. (2010). The nonsense-mediated decay pathway maintains synapse architecture and synaptic vesicle cycle efficacy. Journal of Cell Science, 123(19), 3303-3315.

PMID: 20826458;PMCID: PMC2939802;Abstract:

A systematic Drosophila forward genetic screen for photoreceptor synaptic transmission mutants identified no-on-and-no-off transient C (nonC) based on loss of retinal synaptic responses to light stimulation. The cloned gene encodes phosphatidylinositol-3-kinase-like kinase (PIKK) Smg1, a regulatory kinase of the nonsense-mediated decay (NMD) pathway. The Smg proteins act in an mRNA quality control surveillance mechanism to selectively degrade transcripts containing premature stop codons, thereby preventing the translation of truncated proteins with dominant-negative or deleterious gain-of-function activities. At the neuromuscular junction (NMJ) synapse, an extended allelic series of Smg1 mutants show impaired structural architecture, with decreased terminal arbor size, branching and synaptic bouton number. Functionally, loss of Smg1 results in a ∼50% reduction in basal neurotransmission strength, as well as progressive transmission fatigue and greatly impaired synaptic vesicle recycling during high-frequency stimulation. Mutation of other NMD pathways genes (Upf2 and Smg6) similarly impairs neurotransmission and synaptic vesicle cycling. These findings suggest that the NMD pathway acts to regulate proper mRNA translation to safeguard synapse morphology and maintain the efficacy of synaptic function.

Riddle, N., Jiang, H., An, L., Doerge, R., & Birchler, J. (2009). Gene expression analysis at the intersection of ploidy and hybridity in maize. Theoretical and applied genetics, 120(2), 341-53.