Cyberinfrastructure

Tyson L. Swetnam Ph.D., is Research Assistant Professor of Geoinformatics in the BIO5 Institute. Dr. Swetnam's interests include the applied use of cyberinfrastructure for spatial analysis in the earth and life sciences. His broad and collaborative research portfolio spans dendrochronology, dendroecology, disturbance and landscape ecology, ecohydrology, geographic information systems, geoinformatics, geomorphology, natural resource management, and remote sensing. He is currently lead scientist for the development of spatial data infrastructure with CyVerse, a National Science Foundation (NSF) supported cyberinfrastructure project. Dr. Swetnam holds a joint faculty appointment in the School of Natural Resources and the Environment, where he originally received a Ph.D. and M.S. in Watershed Management. His current research involves funded projects with the NSF, Nature Conservancy, and USDA Agricultural Research Service. He an active member of Data7 Data Science Institute at UA; a volunteer instructor and lessons maintainer for The Carpentries teaching foundational coding and data science skills; and Research Bazaar Arizona, a digital literacy group emerging at the center of modern research.

Over the last two decades my work has focused on developing computational platforms and enabling technologies, primarily directed towards improving research productivity and collaboration for interdisciplinary teams and virtual organizations. The key thrust areas for my work encompass life cycle management for: 1. High throughput and automated bio sample processing systems 2. Highly scalable data and metadata management systems 3. High throughput and performance computing systemsMy recent work has been directed towards supporting pervasive computing needs for mHealth (mobile health) initiatives and health interventions, with focus on developing study management platforms that leverage cloud based telephony, messaging and video in conjunction with wearable’s and sensors.Platforms and tools developed by team are utilized in: 1. Managing samples and data for Clinically certified (CAP/CLIA) NGS pipelines 2. Large scale genotyping (million+ samples) with robotic automation 3. National Cyberinfrastructure iPlant; facilitates researchers to effectively manage their data, computation and collaborations using a cohesive computational platform 4. Health interventions and patient monitoring I firmly believe that measured adoption of emerging computational technologies and methods are essential for life scientist to successfully operate at the scale and complexity of data they are constantly encountering. This can only happen if there is continuing education and practical training focused around the use of Cyberinfrastructure and computational thinking. I have developed and taught workshops, graduate and undergraduate project based learning courses with emphasis on these topicsMy team (Bio Computing Facility) engages with the campus community at various levels ranging from multi- institutional collaborative projects, graduate and undergraduate courses for credit and special topic seminars and workshops. With emphasis on enabling digital discoveries for the life sciences.

Eric Lyons, PhD is an assistant professor at the University of Arizona School of Plant Sciences. Dr. Lyons is internationally known for his work in understanding the evolution, structure, and dynamics of genomes. Core to his research activities is the development of software systems for managing and analyzing genomic data and cyberinfrastructure for the life sciences.Dr. Lyons has published over 30 original research papers and 5 book chapters, many in collaboration with investigators from around the world. He is a frequent presenter at national and international meetings, and has been invited to teach workshops on the analysis of genomic data to plant, vertebrate, invertebrate, microbe, and health researchers.Prior to joining the faculty in the School of Plant Sciences, Dr. Lyons worked with the iPlant Collaborative developing cyberinfrastructure, and managing its scientific activities. In addition, he spent five years working in industry at biotech, pharmaceutical, and software companies. Dr. Lyons’ core software system for managing and analyzing genomic data is called CoGe, and is available for use at http://genomevolution.org

Parker Antin is Professor of Cellular and Molecular Medicine in the College of Medicine, Associate Vice President for Research for the Division of Agriculture, Life and Veterinary Medicine, and Cooperative Extension, and Associate Dean for Research in the College of Agriculture and Life Sciences. In his positions of Associate Vice President and Associate Dean, he is responsible for developing and implementing the research vision for the Colleges of Agriculture and Life Sciences and the College of Veterinary Medicine, with total research expenditures of approximately $65M per year. His responsibilities include oversight of research strategy and portfolio investment, grants and contracts pre award services, research intensive faculty hires and retentions, research communication and marketing, research facilities, and research compliance services. In collaboration with Division and College leadership teams, he has shared responsibilities for philanthropy, budgets and information technology. Dr. Antin is a vertebrate developmental biologist whose research is concerned with the molecular mechanisms of embryonic development. His research has been supported by NIH, NSF, NASA, USDA, and the DOE, as well as several private foundations including the American Heart Association and the Muscular Dystrophy Association, He is the Principal Investigator of CyVerse, a $115M NSF funded cyberinfrastructure project whose mission is to design, deploy and expand a national cyberinfrastructure for life sciences research, and train scientists in its use (http://cyverse.org). With 65,000 users worldwide, CyVerse enables scientists to manage and store data and experiments, access high-performance computing, and share data and results with colleagues and the public. Dr. Antin is also active nationally in the areas of science policy and funding for science. He is a past President of the Federation of Societies for Experimental Biology (FASEB), an umbrella science policy and advocacy organization representing 32 scientific societies and 135,000 scientists. His continued work with FASEB, along with his duties as Associate Vice President and Associate Dean for Research, and CyVerse PI, brings him frequently to Washington, DC, where he advocates for support of science and science policy positions that enhance the scientific enterprise.