Computational biology
Assistant Professor, Agricultural-Biosystems Engineering, Assistant Professor, BIO5 Institute, Assistant Professor, Genetics - GIDP, Assistant Professor, Statistics-GIDP, Clinical Instructor, Pharmacy Practice-Science
Our lab focuses on large-scale –omics datasets, high-throughput computing, and big data analytics. We leverage these technologies to answer questions related to the relationship between microbes, their hosts, and the environment. In particular, we focus on viral-host interactions and co-evolution given environmental factors (i) in aquatic systems and (ii) for phage treatment of diabetic foot ulcers.
Associate Professor, Applied Mathematics - GIDP, Associate Professor, BIO5 Institute, Associate Professor, Genetics - GIDP, Professor, Computer Science
John Kececioglu's research is in applied algorithms, with an emphasis on bioinformatics and computational biology, including: multiple sequence alignment, inverse parametric alignment, sequence assembly, and genome rearrangement. Software developed by his group includes Opal, a tool for multiple sequence alignment, Facet, a tool for alignment accuracy estimation, InverseOpt, a library for inverse parametric optimization, Ipa, a tool for inverse sequence alignment, and AlignAlign, a tool for optimally aligning alignments.